Neuroinformatics 2014

Last month I attended the 2014 Neuroinformatics conference in Leiden, Netherlands. This was a new meeting for me - I'm new to the community - and it was a real eye opener. It was very helpful to be in the presence of a community who've spent so much time and energy thinking about how to manage and analyze enormous sets of biomedical data. Happily, some kind soul video taped basically the whole thing. The videos are available here:


A great set of conference photos is up on Flikr too.

Note: Albert Einstein once lectured in that very same room - and the University of Leiden has been around since 1575 I believe. Pretty amazing.

Brain Data Workshop

Yesterday I was privileged to attend a workshop focused on the future of brain data. Specifically, we were interested in thinking about how to use and share brain data between research groups. This issue is especially relevant considering (a) how much interest the scientific and medical communities have in solving brain problems and (b) the sheer amount of raw data that is being generated by some of these experiments. One researcher was talking about an imaging technique he uses to image nanoscopic slices of brain tissue in three dimensions. He estimates that single 1mm³ block of brain tissue requires well over 100 terabytes to image. Once his new higher resolution system comes on board, that number will nose over 1 petabyte. The era of Big Data is certainly upon us.

We also discussed how other disciplines like astronomy and particle physics have addressed the realities of sharing high volume data that becomes exponentially expensive to produce. Largely, those fields have focused on solving Grand Challenges. Challenges serve the purposes of galvanizing many people within the community around solving the most important, most pressing problems. Ancillary advantages are common use of expensive equipment and centralized access to massive datasets. Perhaps the time has come for the neuroscience equivalent of the Large Hadron Collider project.

In any event, it was nice to have a seat at the table. I enjoy small meetings (fewer than 100 people) such as this where people can just talk and debate and argue. Good stuff.

Lecture Announcement

Next week I will be hosting Dr. John Porrill from the University of Sheffield. He studies mathematical models of motor control loops in the cerebellum and tries to apply these to solving sophisticated robotics control problems. By nature, this work is multidisciplinary and is applicable to researchers in fields such as engineering, computer science, neuroscience, statistics, and biology.

Dr. Porrill will be giving a lecture on Thursday 2/3 at 12:30pm in Temple's engineering building, room 126. All are welcome!

Conference Lecture

This is a talk I gave at the 2010 IEEE Engineering in Medicine and Biology Conference in Buenos Aires, Argentina. The topic is Reconfigurable Embedded System Architecture for Neural Signal Processing:

TEDxPhilly

Some shameless self-promotion ... I gave a TEDx talk recently about engineering the brain machine interface: